Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

The guinea-pig is not a rodent

Abstract

IN 1991 Graur et al. raised the question of whether the guinea-pig, Cavia porcellus, is a rodent1. They suggested that the guinea-pig and myomorph rodents diverged before the separation between myomorph rodents and a lineage leading to primates and artiodactyls. Several findings have since been reported, both for and against this phylogeny, thereby highlighting the issue of the validity of molecular analysis in mammalian phylogeny. Here we present findings based on the sequence of the complete mitochondrial genome of the guinea-pig, which strongly contradict rodent monophyly. The conclusions are based on the cumulative evidence provided by orthologically inherited genes and the use of three different analytical methods, none of which joins the guinea-pig with myomorph rodents. In addition to the phylogenetic conclusions, we also draw attention to several factors that are important for the validity of phylogenetic analysis based on molecular data.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Similar content being viewed by others

References

  1. Graur, D., Hide, W. A. & Li, W. H. Nature 351, 649–652 (1991).

    Article  ADS  CAS  PubMed  Google Scholar 

  2. Li, W. H., Hide, W. A., Zharkikh, A., Ma, D. P. & Graur, D. J. Heredity 83, 174–181 (1992).

    Article  CAS  Google Scholar 

  3. Graur, D., Hide, W. A., Zharkirkh, A. & Li, W. H. Comp. Biochem. Physiol. 101B, 495–498 (1992).

    CAS  Google Scholar 

  4. Wolf, B., Reinecke, K., Aumann, K. D., Brigelius-Flohè, R. & Flohè, L. Biol. Chem. Hoppe-Seyler 374, 641–649 (1993).

    Article  CAS  PubMed  Google Scholar 

  5. Noguchi, T., Fujiwara, S., Hayashi, S. & Sakuraba, H. Comp. Biochem. Physiol. 107, 179–182 (1994).

    Google Scholar 

  6. Ma, D. P., Zharkikh, A., Graur, D., VandeBerg, J. L. & Li, W. H. J. molec. Evol. 36, 327–334 (1993).

    ADS  CAS  PubMed  Google Scholar 

  7. Hasegawa, M., Cao, Y., Adachi, J. & Yano, T. Nature 355, 595 (1992).

    Article  ADS  CAS  PubMed  Google Scholar 

  8. Cao, Y., Adachi, J., Yano, T. & Hasegawa, M. Molec. Biol. Evol. 11, 593–604 (1994).

    CAS  PubMed  Google Scholar 

  9. Kuma, K. & Miyata, T. Jap. J. Genet. 69, 555–566 (1994).

    Article  CAS  Google Scholar 

  10. Frye, M. S. & Hedges, S. B. Molec. Biol. Evol. 12(1), 168–176 (1995).

    Article  CAS  PubMed  Google Scholar 

  11. Martignetti, J. A. & Brosius, J. Proc. natn. Acad. Sci. U.S.A. 90, 9698–9702 (1993).

    Article  ADS  CAS  Google Scholar 

  12. Novacek, N. J. Nature 356, 121–125 (1992).

    Article  ADS  CAS  PubMed  Google Scholar 

  13. Graur, D. FEBS Lett. 325, 152–159 (1993).

    Article  CAS  PubMed  Google Scholar 

  14. Graur, D., Duret, L. & Gouy, M. Nature 379, 333–335 (1996).

    Article  ADS  CAS  PubMed  Google Scholar 

  15. Swofford, D. L. PAUP: Phylogenetic Analysis Using Parsimony Version 3.1.1 (Illinois Natural History Survey, Champaign, 1993).

    Google Scholar 

  16. Adachi, J. & Hasegawa, M. MOLPHY: Programs for Molecular Phylogenetics 2.2 (Computer Science Monographs, No. 27, Institute of Statistical Mathematics, Tokyo, 1992).

    Google Scholar 

  17. Saccone, C., Lanave, C., Pesole, G. & Preparata, G. Meth. Enzym. 183, 570–583 (1990).

    Article  CAS  PubMed  Google Scholar 

  18. Irwin, D. M., Kocher, T. D. & Wilson, A. C. J. molec. Evol. 32, 128–144 (1991).

    Article  ADS  CAS  PubMed  Google Scholar 

  19. Arnason, U., Gullberg, A. & Widegren, B. J. molec. Evol. 33, 556–568 (1991).

    Article  ADS  CAS  PubMed  Google Scholar 

  20. Graur, D. & Higgins, D. G. Molec. Biol. Evol. 11, 357–364 (1994).

    CAS  PubMed  Google Scholar 

  21. Krettek, A., Gullberg, A. & Arnason, U. J. molec. Evol. 41, 952–957 (1995).

    Article  ADS  CAS  PubMed  Google Scholar 

  22. Saitou, N. & Nei, M. Molec. Biol. Evol. 4, 406–425 (1987).

    CAS  PubMed  Google Scholar 

  23. Arnason, U., Xu, X. & Gullberg, A. J. molec. Evol. 42, 145–152 (1996).

    Article  ADS  CAS  PubMed  Google Scholar 

  24. Arnason, U. & Johnsson, E. J. molec. Evol. 34, 493–505 (1992).

    Article  ADS  CAS  PubMed  Google Scholar 

  25. Arnason, U., Gullberg, A., Johnsson, E. & Ledje, C. J. molec. Evol. 37, 323–330 (1993).

    CAS  PubMed  Google Scholar 

  26. Xu, X. & Arnason, U. Gene 148, 357–362 (1994).

    Article  CAS  PubMed  Google Scholar 

  27. Devereux, J., Haeberli, P. & Smithies, O. Nucleic Acids Res. 12, 387–395 (1984).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Felsestein, J. PHYLIP (Phytogeny Inference Package), Version 3.5c (University of Washington, Seattle, 1993).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

D'Erchia, A., Gissi, C., Pesole, G. et al. The guinea-pig is not a rodent. Nature 381, 597–600 (1996). https://doi.org/10.1038/381597a0

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1038/381597a0

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing