Table 2 Microarray validation of 454 SNPs

From: The complete genome of an individual by massively parallel DNA sequencing

Affymetrix genotype*

Affymetrix SNP array

454 Sequence†

Agreement (%)

Homo ref.

254,753

253,348

99.4

Homo var.

104,547

99,387

95.1

Hetero

135,413

102,702

75.8

  1. *Homo ref., homozygous for reference allele; homo var., homozygous for the variant allele; hetero, heterozygous.
  2. †The genotype based on the alleles observed in 454 reads at each position of an Affymetrix marker.
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