Table 1 Data collection, phasing and refinement statistics for TmCdsA structures.

From: Structure and mechanism of an intramembrane liponucleotide synthetase central for phospholipid biosynthesis

 

S200C/S223C (for phasing)

S200C/S223C*

S200C/S258C*

BaCl2 soak

MnCl2soak

TlNO3 soak

CsCl soak

MnCl2+RbCl soak

Data collection

 Space group

P6522

P6522

P6522

P6522

P6522

P6522

P6522

P6522

Cell dimensions

a, c (Å)

141.69, 197.79

142.08, 198.37

141.41, 197.76

141.34, 200.50

141.19, 202.15

141.53, 198.09

141.92, 199.17

140.65, 201.92

α, β, γ (°)

90, 90, 120

90, 90, 120

90, 90, 120

90,90,120

90,90,120

90,90,120

90,90,120

90,90,120

 Wavelength (Å)

1.00077

1.10000

1.00137

1.54178

1.54178

1.54178

1.54178

1.54178

 Resolution (Å)

50–3.6 (3.77–3.63)

50–3.4 (3.48–3.40)

50–3.4 (3.58–3.40)

30–4.5 (4.66–4.50)

30–4.0 (4.14–4.0)

50–4.5 (4.66–4.50)

50–4.0 (4.14–4.0)

30–4.5 (4.66–4.50)

Rsym or Rmerge

0.083 (0.636)

0.099 (0.729)

0.106 (0.673)

0.113(0.448)

0.113 (0.465)

0.147 (0.678)

0.098 (0.499)

0.145 (0.725)

I/σI

22.7 (4.4)

14.1 (2.1)

11.1 (2.9)

15.8 (3.4)

24.1 (5.8)

19.2 (4.3)

20.6 (5.2)

13.8 (2.7)

 Completeness (%)

96.2 (97.7)

98.9 (99.8)

98.7 (98.7)

99.6 (99.4)

99.8 (99.4)

99.4 (99.4)

99.5 (100.0)

99.1 (99.4)

 Redundancy

10.7 (11.0)

4.5 (4.8)

8.2 (7.5)

7.7 (5.2)

13.6 (12.6)

12.9 (12.9)

13.2 (13.1)

8.0 (6.9)

Refinement

 Resolution (Å)

 

50–3.4 (3.47–3.40)

50–3.4 (3.47–3.40)

     

 No. reflections

 

16580/854

16298/821

     

Rwork/Rfree

 

29.6/33.4 (40.5/39.9)

28.8/31.1 (42.1/40.0)

     

 No. of atoms

 

4190

4236

     

Protein

 

4180

4188

     

Ligand/ion

 

10

48

     

B-factors

 

113.3

117.7

     

Protein

 

113.2

117.6

     

Ligand/ion

 

148.3

124.9

     

R.m.s deviations

Bond lengths (Å)

 

0.0098

0.0101

     

Bond angles (°)

 

1.81

1.68

     
  1. TmCdsA, Cds from Thermotoga maritima.
  2. *One crystal each was used for the collection of S200C/S223C or S200C/S258C data for structure refinement. Highest resolution shell is shown in parenthese.