Fig. 2 | Nature Communications

Fig. 2

From: Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data

Fig. 2

Evaluation of the performance of DeepMod on 5mC prediction on E. coli, NA12878, and HX1. a AP (the outer) and AUC (the inner) plots for 5mC within sequence motifs in E. coli for three synthetically introduced 5mC data sets by M.Mpel (CG_MpeI for CG motif), M.Sssl (CG_SssI for CG motif), and M.Hhal (GCGC_HhaI for GCGC motif), respectively. b, c AUC and AP plots for 5mC prediction of all cytosines in E. coli. d, e AP and AUC of 5mC prediction by DeepMod on NA12878. f, g AP and AUC of 5mC prediction by DeepMod on HX1. Cov: coverage. # base: total number of bases used in the evaluation

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