Table 1 Nanopore sequencing data sets used to evaluate DeepMod
Genome | Data set name | Motif | # reads | Coverage | Metha | Reference |
|---|---|---|---|---|---|---|
Escherichia coli | UMR | NAd | 111,238 | 110X | Negb | Simpson et al. 4 |
CG_MsssI | CGc | 69,899 | 67X | 5mC | ||
CG_SssI | CGc | 8679 | 19X | 5mC | ||
CG_MpeI | CGc | 23,593 | 39X | 5mC | ||
GCGC_HhaI | GCGCc | 18,180 | 50X | 5mC | ||
gaAttc_EcoRI | GAATTCc | 16,661 | 27X | 6mA | Stoiber et al. 3 | |
gAtc_dam | GATCc | 17,557 | 33X | 6mA | ||
tcgA_TaqI | TCGAc | 16,249 | 22X | 6mA | ||
Con1 | NAd | 23,762 | 34X | Negb | ||
Con2 | NAd | 34,170 | 40X | Negb | ||
Homo sapiens | NA12878 | CGc | 30X | 5mC | Jain et al. 31 | |
HX1 | CGc | 4,827,155 | 30X | 5mC | Current study | |
Chlamydomonas reinhardtii | C. reinhardtii | NAd | 772,817 | 126X | 6mA | Current study |
