Table 2 High confidence list of 100% novel transcripts along with their genomic co-ordinates, length, strand and phastCons score.

From: Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations

Gene ID

Transcript ID

Coordinates (mm10)

Length (bp)

Strand

phastCons Score

Novelty Score

MSTRG.10752

MSTRG.10752.1

16:91113662-91114155

493

.

0.997

100

MSTRG.11071

MSTRG.11071.1

17:16557283-16557630

347

.

0.997

100

MSTRG.11709

MSTRG.11709.2

17:39636629-39637143

514

0.997

100

MSTRG.13417

MSTRG.13417.2

19:17926989-17927998

1009

+

0.993

100

MSTRG.9039

MSTRG.9039.1

15:31655084-31655385

301

.

0.990

100

MSTRG.17446

MSTRG.17446.1

3:104752371-104752702

331

0.989

100

MSTRG.30048

MSTRG.30048.1

X:146176602-146177068

466

+

0.989

100

MSTRG.12849

MSTRG.12849.1

18:64611849-64612445

596

0.989

100

MSTRG.1816

MSTRG.1816.1

1:178299808-178300378

570

+

0.987

100

MSTRG.18663

MSTRG.18663.1

4:83421622-83422080

458

0.987

100

MSTRG.6455

MSTRG.6455.1

12:102866597-102867299

702

.

0.984

100

MSTRG.12840

MSTRG.12840.1

18:63543865-63545205

1340

+

0.981

100

MSTRG.21639

MSTRG.21639.1

5:127954976-127955377

401

.

0.978

100

MSTRG.8143

MSTRG.8143.1

14:33428605-33429024

419

.

0.973

100

MSTRG.13495

MSTRG.13495.1

19:25346816-25347223

407

.

0.973

100

MSTRG.15865

MSTRG.15865.1

2:157528311-157528617

306

.

0.970

100

MSTRG.20543

MSTRG.20543.1

5:46415104-46415426

322

+

0.970

100

MSTRG.6330

MSTRG.6330.1

12:86845755-86846203

448

.

0.970

100

MSTRG.8249

MSTRG.8249.1

14:48695580-48695978

398

.

0.969

100

MSTRG.7535

MSTRG.7535.1

13:91260953-91262729

1776

+

0.969

100

MSTRG.18684

MSTRG.18684.1

4:87103424-87105078

1654

+

0.967

100

MSTRG.18685

MSTRG.18685.1

4:87103426-87105078

1652

0.967

100

MSTRG.6715

MSTRG.6715.1

13:8289064-8289370

306

.

0.966

100

MSTRG.7905

MSTRG.7905.1

14:15949235-15949774

539

.

0.965

100

MSTRG.7913

MSTRG.7913.1

14:16451876-16452185

309

.

0.953

100

Gene ID

Transcript ID

Coordinates (mm10)

Length (bp)

Strand

phastCons Score

Novelty Score

MSTRG.16504

MSTRG.16504.1

3:36117033-36117334

301

.

1.000

100

MSTRG.18476

MSTRG.18476.1

4:53663579-53663885

306

.

0.993

100

MSTRG.12840

MSTRG.12840.2

18:63543888-63544690

802

+

0.989

100

MSTRG.444

MSTRG.444.1

1:52585218-52585601

383

.

0.988

100

MSTRG.7901

MSTRG.7901.1

14:14447656-14448019

363

.

0.982

100

MSTRG.25445

MSTRG.25445.1

7:127398616-127399037

421

.

0.980

100

MSTRG.3390

MSTRG.3390.1

10:129665538-129665871

333

.

0.975

100

MSTRG.6084

MSTRG.6084.1

12:72048695-72049032

337

.

0.975

100

MSTRG.10567

MSTRG.10567.1

16:53985023-53985331

308

.

0.973

100

MSTRG.10245

MSTRG.10245.1

16:23050282-23050873

591

.

0.973

100

MSTRG.6777

MSTRG.6777.2

13:15119006-15119437

431

+

0.970

100

MSTRG.26441

MSTRG.26441.1

8:72283729-72284163

434

.

0.969

100

MSTRG.10714

MSTRG.10714.1

16:88682165-88682703

538

.

0.966

100

MSTRG.25152

MSTRG.25152.1

7:107951379-107951776

397

.

0.963

100

MSTRG.14539

MSTRG.14539.1

2:34648981-34649511

530

0.956

100

MSTRG.6778

MSTRG.6778.2

13:15118406-15118934

528

+

0.956

100

MSTRG.13452

MSTRG.13452.1

19:23166931-23168119

1188

.

0.956

100

MSTRG.12890

MSTRG.12890.1

18:67920731-67921163

432

.

0.955

100

MSTRG.13017

MSTRG.13017.1

18:90311445-90311766

321

.

0.952

100

  1. High confidence list of transcripts with transcript length (> 300 & < 10000 bp), phastCons score > 0.95; and average expression > 5.0 TPM in atleast four developmental stages. High confidence list of transcripts unique to developmental stages with transcript length (>300 & < 10000), phastCons score > 0.95; expressed (no exp. threshold, as most of transcripts in this category are poorly expressed) in at most two developmental stages.