Table 3 Comparison of log2 fold change of the genes in RNAseq and qRT-PCR.

From: Combining transcriptomics and genetic linkage based information to identify candidate genes associated with Heterobasidion-resistance in Norway spruce

Genes

RNA-seq log2 (fold change)

RNA-seq log2 (fold change)

qPCR log2 (fold change)

qPCR log2 (fold change)

Annotation

I3 vs W3

I7 vs W7

I3 vs W3

I7 vs W7

MA_103386g0010

1.61*

2.81*

0.68

4.51*

NAC- transcription factor

MA_264971g0010

1.93*

2.75*

0.80

5.58

NAC- transcription factor

  1. Comparison of expression patterns of candidate genes in RNAseq and qRT-PCR experiment. The value represent log2 fold change in inoculation compared to wounding at 3 and 7 days post inoculation. I3 and W3 means inoculation and wounding at 3 dpi and I7 and W7 means inoculation and wounding at 7 dpi. Asterisks (*) indicate significant higher induction level in H. parviporum compared to wounding alone (P < 0.05).
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