Table 3 Summary of the performance of PDNET-Contact and PDNET-Distance on the 9 CASP13 free-modeling domains (for which the native structures are publicly available) and on the 131 CAMEO hard-targets.

From: A fully open-source framework for deep learning protein real-valued distances

Dataset

Methods

\(P_{L}\)

\(P_{NC}\)

CASP13 FM

PDNET-Contact

38.8

38.5

PDNET-Distance

32.3

30.3

Top CASP13 group

45.0

45.7

CAMEO-HARD

PDNET-Contact

48.3

45.1

PDNET-Distance

46.7

43.7

trRosetta

48.0

–

  1. Performance of CASP13’s top group and the trRosetta method on the CAMEO-HARD dataset are provided as a reference. Results of the trRosetta method are copied from the Yang et al.18 since the predicted contacts are not publicly available.
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