Table 2 Details of the relevant information provided in the StoneMod database.
From: StoneMod: a database for kidney stone modulatory proteins with experimental evidence
Type of the information | Items displayed | Description (with example) | Resource of the information |
|---|---|---|---|
Protein information | Common name | Full name recommended by the UniProt consortium (e.g. Uromodulin) | UniProtKB13 (https://www.uniprot.org/) |
Alternative name | Synonym of the recommended full name (e.g. Tamm-Horsfall urinary glycoprotein) | UniProtKB13 (https://www.uniprot.org/) | |
UniProt ID | The UniProtKB accession number of a protein that consists of 6 or 10 alphanumerical characters with a hyperlink to the UniProtKB website (e.g. P07911) | UniProtKB13 (https://www.uniprot.org/) | |
Isoform | A hyperlink to the protein isoform (if any) in the UniProtKB website (e.g. P07911) | UniProtKB13 (https://www.uniprot.org/) | |
Protein Atlas | The Protein Atlas identifier with a hyperlink to the Human Protein Atlas website (e.g. P07911) | Human Protein Atlas14 (https://www.proteinatlas.org/) | |
PeptideAtlas | The PeptideAtlas identifier with a hyperlink to the PeptideAtlas website (e.g. P07911) | PeptideAtlas15 (https://www.peptideatlas.org/) | |
Gene information | Gene name | The official full name of the gene (e.g. uromodulin) | NCBI Gene16 (https://www.ncbi.nlm.nih.gov/gene) |
Gene symbol | The official symbol of the gene with a hyperlink to the NCBI Gene website (e.g. UMOD) | NCBI Gene16 (https://www.ncbi.nlm.nih.gov/gene) | |
Ensembl | The Ensembl gene identifier in the Genome annotation database (e.g. ENSG00000169344) | Ensembl18 (https://www.ensembl.org/) | |
Modulatory effects | Crystallization | Modulatory effects on crystallization with references and hyperlinks to PubMed | PubMed searching with manual curation |
Crystal growth | Modulatory effects on crystal growth with references and hyperlinks to PubMed | PubMed searching with manual curation | |
Crystal aggregation | Modulatory effects on crystal aggregation with references and hyperlinks to PubMed | PubMed searching with manual curation | |
Crystal adhesion | Modulatory effects on crystal adhesion with references and hyperlinks to PubMed | PubMed searching with manual curation |
