Table 2 Description of 15 CNVs detected and their association with traits.

No.	Chromosome Name	Start Position	End Position	Length (bp)	Frequency of CNV	P value after FDR correction				validation
No.	Chromosome Name	Start Position	End Position	Length (bp)	Frequency of CNV	b24*	Marbling	pH6	IMF	NGS	QPCR	Published paper
CNV1	1	242457549	242519391	61843	0.87	0.9608	0.0586	0.1401	*0.0435*	Yes	No	Yes
CNV2	3	94706101	94868661	162561	0.83	0.7124	0.5848	0.2257	0.3560	Yes	—	No
CNV3	4	96277909	96381947	104039	0.26	0.6598	0.7011	0.1532	0.9950	Yes	Yes	Yes
CNV4	4	133873894	133948941	75048	0.40	0.9770	0.6258	0.4987	0.7785	Yes	Yes	Yes
CNV5	5	21339891	22435998	1096108	0.14	1.0000	0.3587	0.1169	0.5496	Yes	Yes	Yes
CNV6	5	60936295	61005896	69602	0.26	0.4648	0.1723	0.8430	0.4360	Yes	Yes	No
CNV7	5	79366287	79807784	441498	0.72	0.1436	0.0756	0.2109	0.2191	Yes	Yes	Yes
CNV8	7	121924542	122002552	78011	0.85	*0.0093*	0.3351	0.1381	0.5722	Yes	No	Yes
CNV9	10	9369752	9462206	92455	0.47	*0.0069*	*0.0283*	*0.0016*	*0.0272*	Yes	Yes	Yes
CNV10	10	49173528	49255139	81612	0.57	0.0522	0.0750	*0.0010*	*0.0481*	Yes	Yes	Yes
CNV11	12	11462476	11720468	257993	0.58	*0.0080*	0.0877	0.1325	0.1275	Yes	No	Yes
CNV12	12	56893678	57020468	126791	0.79	0.0598	*0.0055*	*0.0012*	*0.0030*	Yes	Yes	Yes
CNV13	17	41839309	41873384	34076	0.53	*0.0074*	0.0625	0.0989	0.0717	Yes	Yes	No
CNV14	18	23383197	23623258	240062	0.43	0.9936	0.4533	0.1470	0.7194	Yes	Yes	Yes
CNV15	18	46776812	46983072	206261	0.35	0.6018	0.1609	*0.0110*	0.1617	Yes	Yes	Yes

1. p values < 0.05 after FDR correction were shown in bold and italic.
2. pH6, b24* and IMF were stand for pH value at 6 h postmortem, color b* at 24 h postmortem and intramuscular fat.

Quick links

Search