Table 2 Characteristics of the cross validation experiments for the Acinetobacter baumannii, Staphylococcus aureus and Streptococcus pneumoniae AdaBoost classifiers.
From: Antimicrobial Resistance Prediction in PATRIC and RAST
Antibiotic | Available Genomes | Genomes used per trial * | Classifier statistics | ||||||
|---|---|---|---|---|---|---|---|---|---|
RES | SUS | Test set | Training set | AUC | F1 plot point | F1 Score | Accuracy at F1 point | Accuracy at point zero | |
A. baumannii | |||||||||
Carbapenem | 122 | 110 | 11 | 99 | 0.964 | 0.193 | 0.950 | 0.950 | 0.945 |
S. aureus | |||||||||
Methicillin | 491 | 115 | 11 | 99 | 0.991 | 2.283 | 0.995 | 0.995 | 0.995 |
S. pneumoniae | |||||||||
Beta-lactam | 1563 | 1504 | 150 | 1350 | 0.971 | –0.029 | 0.907 | 0.909 | 0.909 |
Co-trimoxazole | 2124 | 584 | 58 | 522 | 0.942 | –0.189 | 0.880 | 0.878 | 0.876 |
